1. Import data | 2. Set analysis parameters | 3. Assign gRNAs to cells (optional) | 4. Run quality control (optional) | 5. Run calibration check | 6. Run power check (optional) | 7. Run discovery analysis | 8. Write outputs to directory | Further reading

Initializing an odm object via create_odm_from_cellranger() | Interacting with the odm object | Supported modalities | The cell-wise covariate data frame | Reading an .odm file into R | Initializing an odm object via create_odm_from_r_matrix() | Notes on compression